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Publications

PUBLISHED

Nguyen, Diep M. N.; Schut, Gerrit; Poudel, Saroj; Zadvornyy, Oleg A.; Tokmina-Lukaszewska, Monika; Lipscomb, Gina L.; Adams, Leslie A.; Dimsmore, Jessica; Nixon, Will; Bothner, Brian; Boyd, Eric; Peters, John W.; and Adams, Michael W.W. Two Functionally Distinct Bifurcating NADP-Dependent Ferredoxin Oxidoreductases Maintain the Primary Redox Balance of Pyrococcus furiosus. J Biol Chem. 2017. [DOI: 10.1074/jbc.M117.794172].

Ledbetter, Rhesa N.; Garcia Costas, Amaya M.; Lubner, Carolyn E.; Mulder, David W.; Tokmina-Lukaszewska, Monika; Artz, Jacob H.; Patterson, Angela; Magnuson,Timothy S.; Jay, Zackary J. H.; Duan, Diessel; Miller, Jacquelyn; Plunkett, Mary H.; Hoben, John P.; Barney, Brett M.; Carlson, Ross P.; Miller, Anne-Frances; Bothner, Brian; King, Paul W.; Peters, John W. Peters; and Seefeldt, Lance C. The Electron Bifurcating FixABCX Protein Complex from Azotobacter vinelandii: Generation of Low-Potential Reducing Equivalents for Nitrogenase Catalysis. Biochemistry. 2017. [DOI: 10.1021/acs.biochem.7b00389].

Artz, Jacob H.; Mulder, David; Ratzloff, Michael; Lubner, Carolyn; Zadvornyy, Oleg; LeVan, Axl; Williams, S.; Adams, Michael W.W.; Jones, Anne K.; King, Paul W.; and Peters, John W. The reduction potentials of [FeFe]-hydrogenase accessory iron-sulfur clusters provide insights into the energetics of proton reduction catalysis. J Am Chem Soc. 2017. [DOI: 10.1021/jacs.7b02099].

Hoben, John P.; Lubner, Carolyn E.; Schut. Gerrit J.; Nguyen, Diep M. N.; Hempel, Karl W.; Adams, Michael W. W.; King, Paul W.; and Miller, Anne-Frances. Equilibrium and ultrafast kinetic studies manipulating electron transfer: a short-lived flavin semiquinone is not sufficient for electron bifurcation. J Biol Chem. 2017. [DOI: 10.1074/jbc.M117.794214].

Lubner, Carolyn E.; Jennings, David P.; Mulder, David W.; Schut, Gerrit J.; Zadvornyy, Oleg A.; Hoben, John P.; Tokmina-Lukaszewska, Monika; Berry, Luke; Nguyen, Diep M.; Lipscomb, Gina L.; Bothner, Brian; Jones, Anne K.; Miller, Anne-Frances; King, Paul W.; Adams, Michael W. W.; and Peters, John W. Mechanistic insights into energy conservation by flavin-based electron bifurcation. Nat Chem Biol. 2017. [DOI: 10.1038/nchembio.2348]

Hoben, John P.; Wang, Jianing; and Miller, Anne-Frances. Unboiling an Egg: An Introduction to Circular Dichroism and Protein Refoldin. J Chem Educ. 2016. [DOI: 10.1021/acs.jchemed.6b00319]

Danyal, Karamatullah; Shaw, Sudipta; Page, Taylor R.; Duval, Simon; Horitani, Masaki; Marts, Amy R.; Lukoyanov, Dmitriy; Dean, Dennis R.; Raugei, Simone; Hoffman, Brian M.; Seefeldt, Lance C.; and Antony, Edwin. Negative cooperativity in the nitrogenase Fe protein electron delivery cycle. Proc Natl Acad Sci U S A. 2016. [DOI: 10.1073/pnas.1613089113].

Fixen, Kathryn R.; Zheng, Yanning; Harris, Derek F; Shaw, Sudipta; Yang, Zhi-Yong; Dean, Dennis R; Seefeldt, Lance C.; and Harwood, Caroline S. Light-driven carbon dioxide reduction to methane by nitrogenase in a photosynthetic bacterium. Proc Natl Acad Sci U S A. 2016. [DOI: 10.1073/pnas.1611043113]

Yang, Zhi-Yong; Ledbetter, Rhesa; Shaw, Sudipta; Pence, Natasha K.; Tokmina-Lukaszewska, Monika; Eilers, Brian J.; Guo, Qingjuan; Pokhrel, Nilisha; Cash, Valerie L.; Dean, Dennis R.; Antony, Edwin; Bothner, Brian; Peters, John W.; and Seefeldt, Lance C. Evidence that the Pi Release Event is the Rate Limiting Step in the Nitrogenase Catalytic Cycle. Biochemistry. 2016. [10.1021/acs.biochem.6b00421]

Poudel, Saroj; Tokmina-Lukaszewska, Monika; Colman, Daniel R.; Refai, Mohammed; Schut, Gerrit J.; King, Paul W.; Maness, Pin-Ching; Adams, Michael W. W.; Peters, John W.; Bothner, Brian; and Boyd, Eric S. Unification of [FeFe]-hydrogenases into three structural and functional groups. Biochim Biophys Acta Gen Subj. 2016. [DOI: 10.1016/j.bbagen.2016.05.034]

Brown KA, Harris DF, Wilker MB, Rasmussen A, Khadka N, Hamby H, Keable S, Dukovic G, Peters JW, Seefeldt LC, King PW. Light-driven Dinitrogen reduction catalyzed by a CdS:nitrogenase MoFe protein biohybrid. Science. 2016. [10.1126/science.aaf2091].

Peters, John W.; Miller, Anne-Frances; Jones, Anne K.; King, Paul W.; and Adams, Michael W. W. Electron bifucation. Curr Opin Chem Biol. 2016. [10.1016/j.cbpa.2016.03.007]

Schut, Gerrit J.; Lipscomb, Gina L.; Nguyen, Diep M. N.; Kelly, Robert M.; and Adams, Michael W. W. Heterologous production of an energy-conserving carbon monoxide dehydrogenase complex in the hyperthermophile Pyrococcus furiosus. Front Microbiol. 2016. [10.3389/fmicb.2016.00029]

Schut, Gerrit J.; Zadvornyy, Oleg A.; Wu, Chang-Hao; Peters, John W.; Boyd, Eric S.; and Adams, Michael W. W. The role of geochemistry and energetics in the evolution of modern respiratory complexes from a proton-reducing ancestor. Biochim Biophys Acta Bioenerg. 2016. [10.1016/j.bbabio.2016.01.010]

Cohen, Aina E.; Soltis, S. Michael; Gonzalez, Ana Z.; Aguila, Laura; Alonso-Mori, Roberto; Barnes, Christopher O.; Baxter, Elizabeth L.; Brehmer, Winnie; Brewster, Aaron S.; Brunger, Axel T.; Calero, Guillermo; Chang, Joseph F.; Chollet, Matthieu; Ehrensberger, Paul; Eriksson, Thomas L.; Feng, Yiping; Hattne, Johan; Hedman, Britt; Hollenbeck, Michael; Holton, James M.; Keable, Stephen; Kobilka, Brian K.; Kovaleva, Elena G.; Kruse, Andrew C.; Lemke, Henrik T.; Lin, Guowu; Lyubimov, Artem Y.; Manglik, Aashish; Mathews, Irimpan I.; McPhillips, Scott E.; Nelson, Silke; Peters, John W.; Sauter, Nicholas K.; Smith, Clyde A.; Song, Jinhu; Stevenson, Hilary P.; Tsai, Yingssu; Uervirojnangkoorn, Monarin; Vinetsky, Vladimir; Wakatsuki, Soichi; Weis, William I.; Zadvornyy, Oleg A.; Zeldin, Oliver B.; Zhu, Diling; and Hodgson, Keith O. Goniometer-based femtosecond crystallography with X-ray free electon lasers. Proc Natl Acad Sci U S A. 2014. [10.1073/pnas.1418733111]

Peters, John W.; Schut, Gerrit J.; Boyd, Eric S.; Mulder, David W.; Shepard, Eric M.; Broderick, Joan B.; King, Paul W.; and Adams, Michael W. W. [FeFe]- and [NiFe]-hydrogenase diversity, mechanism, and maturation. Biochim Biophys Acta Mol Cell Res. 2015. [10.1016/j.bbamcr.2014.11.021]

 

ACCEPTED

Artz, Jacob H.; Zadvornyy, Oleg A.; Mulder, David W.; King, Paul W.; and Peters, John W. Structural characterization of poised states in the oxygen sensitive hydrogenases and nitrogenases.
Accepted - Methods in Enzymology.

Therien, Jessie; Artz, Jacob H.; Poudel, Saroj; Hamilton, Trinity L.; Liu, Zhenfeng; Noone, Seth; Adams, Michael W. W.; King, Paul W.; Bryant, Donald A.; Boyd, Eric S.; and Peters, John W. The physiological functions and structural determinants of catalytic bias in the [FeFe]-hydrogenases CpI and CpII of Clostridium pasteurianum strain W.
Accepted - Frontiers in Microbiology.

Artz, Jacob H.; Mulder, David W.; Poudel, Saroj; Colman, Daniel; Schut, Gerrit J.; Williams, S. Garrett; Jones, Anne K.; Adams, Michael W.W.; Boyd, Eric S.; King, Paul W.; Peters, John W. Structure-Function of [FeFe]- and [NiFe]-Hydrogenases: An Overview of Diversity, Mechanism, Maturation, and Bifurcation.
Accepted - book chapter in “Microalgal Hydrogen Production: Achievements and Perspectives,” Royal Society of Chemistry; G. Torzillo and M. Seibert, Editors.

 

SUBMITTED/UNDER REVIEW

Garcia-Costas, Amaya; Poudel, Saroj; Miller, Anne-Frances; Schut, Gerrit; Ledbetter, Rhesa; Fixen, Kathryn; Seefeldt, Lance C.; Adams, Michael W.W.; Harwood, Caroline S.; Boyd, Eric S.; and Peters, John W. Defining Electron Bifurcation in the Electron Transferring Flavoprotein Family.
Revision requested - J Bacteriol

Losey, Nathaniel; Mus, Florence; Peters, John W.; Le, Huynh; and McInerney. Syntrophomonas wolfei Uses a NADH-Dependent, Ferredoxin-Independent, [FeFe]-Hydrogenase to Reoxidize NADH.
Revision requested - Appl Environ Microbiol

Pence, Natasha; Tokmina-Lukaszewska, Monika; Yang, Zhi-Yong; Ledbetter, Rhesa N.; Seefeldt, Lance C.; Bothner, Brian; and Peters, John W. Interactions between Fe protein and flavodoxin support reduction preceding nucleotide exchange in the nitrogenase Fe protein cycle.
Revision requested - - J Biol Chem

Berry, Luke; Poudel, Saroj; Tokmina-Lukaszewska, Monika; Colman, Dan; Schut, Gerrit J.; Adams, Michael W. W.; Peters, John W.; Boyd, Eric; and Bothner, Brian. H/D Exchange Mass Spectrometry and Statistical Coupling Analysis reveal a role for allostery in a transhydrogenase catalytic cycle.
Revision requested - Biochim Biophys Acta Gen Subj

Zhang P, Yuly JL, Lubner, CE, Mulder DW, King PW, Peters, JW, Beratan DN. Electron Bifurcation: Thermodynamics and Kinetics of Multi-Electron Brokering Redox Chemistry.
Submitted - Acc Chem Res