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Publications

PUBLISHED

Garcia Costas AM, Poudel S, Miller AF, Schut GJ, Ledbetter RN, Fixen KR, Seefeldt LC, Adams MWW, Harwood CS, Boyd ES, Peters JW. Defining Electron Bifurcation in the Electron Transferring Flavoprotein Family. J Bacteriol. 2017. [DOI: 10.1128/JB.00440-17]

Losey NA, Mus F, Peters JW, Le HM, McInerney MJ. Syntrophomonas wolfei Uses a NADH-Dependent, Ferredoxin-Independent, [FeFe]-Hydrogenase to Reoxidize NADH. Appl Environ Microbiol. 2017. [DOI: 10.1128/AEM.01335-17]

Pence N, Tokmina-Lukaszewska M, Yang ZY, Ledbetter RN, Seefeldt LC, Bothner B, Peters JW. Unraveling the interactions of the physiological reductant flavodoxin with the different conformations of the Fe protein in the nitrogenase cycle. J Biol Chem. 2017. [DOI: 10.1074/jbc.M117.801548]

Therien JB, Artz JH, Poudel S, Hamilton TL, Liu Z, Noone SM, Adams MWW, King PW, Bryant DA, Boyd ES, Peters JW. The Physiological Functions and Structural Determinants of Catalytic Bias in the [FeFe]-Hydrogenases CpI and CpII of Clostridium pasteurianum Strain W5. Front Microbiol. 2017. [DOI: 10.3389/fmicb.2017.01305]

Nguyen, Diep M. N.; Schut, Gerrit; Poudel, Saroj; Zadvornyy, Oleg A.; Tokmina-Lukaszewska, Monika; Lipscomb, Gina L.; Adams, Leslie A.; Dimsmore, Jessica; Nixon, Will; Bothner, Brian; Boyd, Eric; Peters, John W.; and Adams, Michael W.W. Two Functionally Distinct Bifurcating NADP-Dependent Ferredoxin Oxidoreductases Maintain the Primary Redox Balance of Pyrococcus furiosus. J Biol Chem. 2017. [DOI: 10.1074/jbc.M117.794172].

Ledbetter, Rhesa N.; Garcia Costas, Amaya M.; Lubner, Carolyn E.; Mulder, David W.; Tokmina-Lukaszewska, Monika; Artz, Jacob H.; Patterson, Angela; Magnuson,Timothy S.; Jay, Zackary J. H.; Duan, Diessel; Miller, Jacquelyn; Plunkett, Mary H.; Hoben, John P.; Barney, Brett M.; Carlson, Ross P.; Miller, Anne-Frances; Bothner, Brian; King, Paul W.; Peters, John W. Peters; and Seefeldt, Lance C. The Electron Bifurcating FixABCX Protein Complex from Azotobacter vinelandii: Generation of Low-Potential Reducing Equivalents for Nitrogenase Catalysis. Biochemistry. 2017. [DOI: 10.1021/acs.biochem.7b00389].

Artz, Jacob H.; Mulder, David; Ratzloff, Michael; Lubner, Carolyn; Zadvornyy, Oleg; LeVan, Axl; Williams, S.; Adams, Michael W.W.; Jones, Anne K.; King, Paul W.; and Peters, John W. The reduction potentials of [FeFe]-hydrogenase accessory iron-sulfur clusters provide insights into the energetics of proton reduction catalysis. J Am Chem Soc. 2017. [DOI: 10.1021/jacs.7b02099].

Hoben, John P.; Lubner, Carolyn E.; Schut. Gerrit J.; Nguyen, Diep M. N.; Hempel, Karl W.; Adams, Michael W. W.; King, Paul W.; and Miller, Anne-Frances. Equilibrium and ultrafast kinetic studies manipulating electron transfer: a short-lived flavin semiquinone is not sufficient for electron bifurcation. J Biol Chem. 2017. [DOI: 10.1074/jbc.M117.794214].

Lubner, Carolyn E.; Jennings, David P.; Mulder, David W.; Schut, Gerrit J.; Zadvornyy, Oleg A.; Hoben, John P.; Tokmina-Lukaszewska, Monika; Berry, Luke; Nguyen, Diep M.; Lipscomb, Gina L.; Bothner, Brian; Jones, Anne K.; Miller, Anne-Frances; King, Paul W.; Adams, Michael W. W.; and Peters, John W. Mechanistic insights into energy conservation by flavin-based electron bifurcation. Nat Chem Biol. 2017. [DOI: 10.1038/nchembio.2348]

Hoben, John P.; Wang, Jianing; and Miller, Anne-Frances. Unboiling an Egg: An Introduction to Circular Dichroism and Protein Refoldin. J Chem Educ. 2016. [DOI: 10.1021/acs.jchemed.6b00319]

Danyal, Karamatullah; Shaw, Sudipta; Page, Taylor R.; Duval, Simon; Horitani, Masaki; Marts, Amy R.; Lukoyanov, Dmitriy; Dean, Dennis R.; Raugei, Simone; Hoffman, Brian M.; Seefeldt, Lance C.; and Antony, Edwin. Negative cooperativity in the nitrogenase Fe protein electron delivery cycle. Proc Natl Acad Sci U S A. 2016. [DOI: 10.1073/pnas.1613089113].

Fixen, Kathryn R.; Zheng, Yanning; Harris, Derek F; Shaw, Sudipta; Yang, Zhi-Yong; Dean, Dennis R; Seefeldt, Lance C.; and Harwood, Caroline S. Light-driven carbon dioxide reduction to methane by nitrogenase in a photosynthetic bacterium. Proc Natl Acad Sci U S A. 2016. [DOI: 10.1073/pnas.1611043113]

Yang, Zhi-Yong; Ledbetter, Rhesa; Shaw, Sudipta; Pence, Natasha K.; Tokmina-Lukaszewska, Monika; Eilers, Brian J.; Guo, Qingjuan; Pokhrel, Nilisha; Cash, Valerie L.; Dean, Dennis R.; Antony, Edwin; Bothner, Brian; Peters, John W.; and Seefeldt, Lance C. Evidence that the Pi Release Event is the Rate Limiting Step in the Nitrogenase Catalytic Cycle. Biochemistry. 2016. [10.1021/acs.biochem.6b00421]

Poudel, Saroj; Tokmina-Lukaszewska, Monika; Colman, Daniel R.; Refai, Mohammed; Schut, Gerrit J.; King, Paul W.; Maness, Pin-Ching; Adams, Michael W. W.; Peters, John W.; Bothner, Brian; and Boyd, Eric S. Unification of [FeFe]-hydrogenases into three structural and functional groups. Biochim Biophys Acta Gen Subj. 2016. [DOI: 10.1016/j.bbagen.2016.05.034]

Brown KA, Harris DF, Wilker MB, Rasmussen A, Khadka N, Hamby H, Keable S, Dukovic G, Peters JW, Seefeldt LC, King PW. Light-driven Dinitrogen reduction catalyzed by a CdS:nitrogenase MoFe protein biohybrid. Science. 2016. [10.1126/science.aaf2091].

Peters, John W.; Miller, Anne-Frances; Jones, Anne K.; King, Paul W.; and Adams, Michael W. W. Electron bifucation. Curr Opin Chem Biol. 2016. [10.1016/j.cbpa.2016.03.007]

Schut, Gerrit J.; Lipscomb, Gina L.; Nguyen, Diep M. N.; Kelly, Robert M.; and Adams, Michael W. W. Heterologous production of an energy-conserving carbon monoxide dehydrogenase complex in the hyperthermophile Pyrococcus furiosus. Front Microbiol. 2016. [10.3389/fmicb.2016.00029]

Schut, Gerrit J.; Zadvornyy, Oleg A.; Wu, Chang-Hao; Peters, John W.; Boyd, Eric S.; and Adams, Michael W. W. The role of geochemistry and energetics in the evolution of modern respiratory complexes from a proton-reducing ancestor. Biochim Biophys Acta Bioenerg. 2016. [10.1016/j.bbabio.2016.01.010]

Cohen, Aina E.; Soltis, S. Michael; Gonzalez, Ana Z.; Aguila, Laura; Alonso-Mori, Roberto; Barnes, Christopher O.; Baxter, Elizabeth L.; Brehmer, Winnie; Brewster, Aaron S.; Brunger, Axel T.; Calero, Guillermo; Chang, Joseph F.; Chollet, Matthieu; Ehrensberger, Paul; Eriksson, Thomas L.; Feng, Yiping; Hattne, Johan; Hedman, Britt; Hollenbeck, Michael; Holton, James M.; Keable, Stephen; Kobilka, Brian K.; Kovaleva, Elena G.; Kruse, Andrew C.; Lemke, Henrik T.; Lin, Guowu; Lyubimov, Artem Y.; Manglik, Aashish; Mathews, Irimpan I.; McPhillips, Scott E.; Nelson, Silke; Peters, John W.; Sauter, Nicholas K.; Smith, Clyde A.; Song, Jinhu; Stevenson, Hilary P.; Tsai, Yingssu; Uervirojnangkoorn, Monarin; Vinetsky, Vladimir; Wakatsuki, Soichi; Weis, William I.; Zadvornyy, Oleg A.; Zeldin, Oliver B.; Zhu, Diling; and Hodgson, Keith O. Goniometer-based femtosecond crystallography with X-ray free electon lasers. Proc Natl Acad Sci U S A. 2014. [10.1073/pnas.1418733111]

Peters, John W.; Schut, Gerrit J.; Boyd, Eric S.; Mulder, David W.; Shepard, Eric M.; Broderick, Joan B.; King, Paul W.; and Adams, Michael W. W. [FeFe]- and [NiFe]-hydrogenase diversity, mechanism, and maturation. Biochim Biophys Acta Mol Cell Res. 2015. [10.1016/j.bbamcr.2014.11.021]

 

ACCEPTED

Artz, Jacob H.; Zadvornyy, Oleg A.; Mulder, David W.; King, Paul W.; and Peters, John W. Structural characterization of poised states in the oxygen sensitive hydrogenases and nitrogenases.
Accepted - Methods in Enzymology.

Artz, Jacob H.; Mulder, David W.; Poudel, Saroj; Colman, Daniel; Schut, Gerrit J.; Williams, S. Garrett; Jones, Anne K.; Adams, Michael W.W.; Boyd, Eric S.; King, Paul W.; Peters, John W. Structure-Function of [FeFe]- and [NiFe]-Hydrogenases: An Overview of Diversity, Mechanism, Maturation, and Bifurcation.
Accepted - book chapter in “Microalgal Hydrogen Production: Achievements and Perspectives,” Royal Society of Chemistry; G. Torzillo and M. Seibert, Editors.

 

SUBMITTED/UNDER REVIEW

Berry, Luke; Poudel, Saroj; Tokmina-Lukaszewska, Monika; Colman, Dan; Schut, Gerrit J.; Adams, Michael W. W.; Peters, John W.; Boyd, Eric; and Bothner, Brian. H/D Exchange Mass Spectrometry and Statistical Coupling Analysis reveal a role for allostery in a transhydrogenase catalytic cycle.
Revision requested - Biochim Biophys Acta Gen Subj

Zhang P, Yuly JL, Lubner, CE, Mulder DW, King PW, Peters, JW, Beratan DN. Electron Bifurcation: Thermodynamics and Kinetics of Multi-Electron Brokering Redox Chemistry.
Submitted - Acc Chem Res